Index

Symbols

--alternative_matrix command line option --version command line option -automated1 command line option -backtrans command line option -block command line option -clustal command line option -clusters command line option -colnumbering command line option -compareset command line option -complementary command line option -cons command line option -ct command line option -cw command line option -fasta command line option -fasta_m10 command line option -forceselect command line option -gappyout command line option -gt command line option -gw command line option -h command line option -htmlout command line option -ignorestopcodon command line option -in command line option -keepheader command line option -keepseqs command line option -matrix command line option -maxidentity command line option -mega command line option -nbrf command line option

-nexus command line option -noallgaps command line option -nogaps command line option -out command line option -phylip command line option -phylip3.2 command line option -phylip3.2_m10 command line option -phylip_m10 command line option -phylip_paml command line option -phylip_paml_m10 command line option -resoverlap command line option -selectcols command line option -selectseqs command line option -seqoverlap command line option -sfc command line option -sft command line option -sgc command line option -sgt command line option -sident command line option -soverlap command line option -splitbystopcodon command line option -ssc command line option -sst command line option -st command line option -strict command line option -strictplus command line option -sw command line option -terminalonly command line option -w command line option

C

command line option --alternative_matrix --version -automated1 -backtrans -block -clustal -clusters -colnumbering -compareset -complementary -cons -ct -cw -fasta -fasta_m10 -forceselect -gappyout -gt -gw -h -htmlout -ignorestopcodon -in -keepheader -keepseqs -matrix -maxidentity -mega -nbrf -nexus -noallgaps -nogaps -out -phylip -phylip3.2 -phylip3.2_m10 -phylip_m10 -phylip_paml -phylip_paml_m10 -resoverlap -selectcols -selectseqs -seqoverlap -sfc -sft -sgc -sgt -sident -soverlap -splitbystopcodon -ssc -sst -st -strict -strictplus -sw -terminalonly -w